SNP Profiles matching PA 124 [PER]

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 Key

 1234567891011121314
_Input profile
TTCCACGGCCGGCCCCGGCCGGGGAACC
1._RUQ_1642
TTCCACGGCCGGCCCCGGCCGGGGAACC
2._RUQ_1642
TTCCACGGCCGGCCCCGGCCGGGGAACC
3._PA_195_[PER]
__ACGGCC_CCCCGGCC__AA_
4._PA_195_[PER]
__ACGGCC_CCCCGGCC__AA_
5._PA_195_[PER]
__ACGGCC_CCCCGGCC__AA_
6._PA_195_[PER]
__ACGGCC_CCCCGGCC__AA_
7._RUQ_1642
__ACGGCC_CCCCGGCC__AA_
8._RUQ_1642
__ACGGCC_CCCCGGCC__AA_
9._PA_195_[PER]
__ACGGCC_CC_GGCC__AA_
10._GC-05-166-4-19
TTCCACGGCCGGCCCCGGCCGGGGAACC
11._GC-05-166-4-19
TTCCACGGCCGGCCCCGGCCGGGGAACC
12._GC-05-166-4-19
TTCCACGGCCGGCCCCGGCCGGGGAACC
13._GC-05-166-4-19
TTCCACGGCCGGCCCCGGCCGGGGAACC
14._PA_115_[PER]
__ACGGCC_AC-GGCC__AA_
15._PA_165_[PER]
__ACGGCC_AC-GGCC__AA_
16._GC-03-032-3-11
TTCCCCGGCCGG_CCAGCCGGGGAACC
17._PA_187_[PER]
__ACGGCC_CCCCGGCC__AA_
18._GC-07-077-4-21
TTCCCCGGCCGGCCCCAGCCGGGGAACC
19._PA_189_[PER]
__ACGGCC_CC-GGCC__AA_
20._GC-03-032-3-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
21._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
22._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
23._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
24._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
25._RUQ_1436
TTCCCCGGCCGGACCCAGCCGGGGAACC
26._RUQ_32
TTCCCCGGCCGGACCCAGCCGGGGAACC
27._GC-08-275-8-47
TTCCACGTCCGG_CCAACCGGGGAACC
28._GC-08-275-8-47
TTCCACGTCCGG_CCAACCGGGGAACC
29._GC-08-275-8-47
TTCCACGTCCGG_CCAACCGGGGAACC
 1516171819202122232425262728
_Input profile
AAAACCGGCGCCTTTTCTGGAGTTAAGG
1._RUQ_1642
AAAACCGGCGCCTTTTCTGGAGTTAAGG
2._RUQ_1642
AAAACCGGCGCCTTTTCTGGAGTTAAGG
3._PA_195_[PER]
AAAACCGGCGCC_TT_GG___GG
4._PA_195_[PER]
AAAACCGGCGCC_TT_GG___GG
5._PA_195_[PER]
AAAACCGGCGCC_TT_GG___GG
6._PA_195_[PER]
AAAACCGGCGCC_TT_GG___GG
7._RUQ_1642
AAAACCGGCGCC_TT_GG___GG
8._RUQ_1642
AAAACCGGCGCC_TT_GG___GG
9._PA_195_[PER]
AAAACCGGCGCC_TT_GG___GG
10._GC-05-166-4-19
AAAACCGGCGCCTTTTCTGGAGTTAAGG
11._GC-05-166-4-19
AAAACCGGCGCCTTTTCTGGAGTTAAGG
12._GC-05-166-4-19
AAAACCGGCGCCTTTTCTGGAGTTAAGG
13._GC-05-166-4-19
AAAACCGGCGCCTTTTCTGGAGTTAAGG
14._PA_115_[PER]
AAAACCGGGGCC_TT_-___GG
15._PA_165_[PER]
AAACCCGGCGCC_TT_-___GG
16._GC-03-032-3-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
17._PA_187_[PER]
AGAACCGTCCCC_TT_-___GG
18._GC-07-077-4-21
AAACCCGTCGCCCCTTCTGGAGTTAAGG
19._PA_189_[PER]
AGAACCGTCCCC_TT_-___GG
20._GC-03-032-3-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
21._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
22._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
23._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
24._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
25._RUQ_1436
AAACCCGTCGCCCTTTTTGGAGTTAAGG
26._RUQ_32
AAACCTGTCGCCTTTTCTGGAGTTAAGG
27._GC-08-275-8-47
AAAACCGTGGACTTTTCTGGAGTTAAGG
28._GC-08-275-8-47
AAAACCGTGGACTTTTCTGGAGTTAAGG
29._GC-08-275-8-47
AAAACCGTGGACTTTTCTGGAGTTAAGG
 2930313233343536373839404142
_Input profile
CCCCGGAGCCCCGGGGTTTTTTCCCCCG
1._RUQ_1642
CCCC-AGCCCCGGGGTTTTTTCCCCCG
2._RUQ_1642
CCCC-AGCCCCGGGGTTTTTTCCCCCG
3._PA_195_[PER]
_CC_AG_CC___TT__CCCG
4._PA_195_[PER]
_CC_AG_CC___TT__CCCG
5._PA_195_[PER]
_CC_AG_CC___TT__CCCG
6._PA_195_[PER]
_CC_AG_CC___TT__CCCG
7._RUQ_1642
_CC_AG_CC___TT__CCCG
8._RUQ_1642
_CC_AG_CC___TT__CCCG
9._PA_195_[PER]
_CC_AG_CC___TT__CCCG
10._GC-05-166-4-19
CCCCGGAGCTCCGGGGTTTTTTCCCCCG
11._GC-05-166-4-19
CCCCGGAGCTCCGGGGTTTTTTCCCCCG
12._GC-05-166-4-19
CCCCGGAGCTCCGGGGTTTTTTCCCCCG
13._GC-05-166-4-19
CCCCGGAGCTCCGGGGTTTTTTCCCCCG
14._PA_115_[PER]
CCCC_GG_CC___TT__CCCG
15._PA_165_[PER]
CCCC_AG_CC___TT__CCCG
16._GC-03-032-3-11
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
17._PA_187_[PER]
CCCC_AG_CC___TT__CTCG
18._GC-07-077-4-21
CCCCGG_CCCCGGGGTTTTTTCCCCGG
19._PA_189_[PER]
CCCC_AG_CC___TT__CTCG
20._GC-03-032-3-11
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
21._GC-01-034-2-11
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
22._GC-01-034-2-11
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
23._GC-01-034-2-11
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
24._GC-01-034-2-11
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
25._RUQ_1436
CCCC-AGCCCCGGGGTTTTTTCCCCGG
26._RUQ_32
CCCC-AGCCCCGGGGTTTTCTCCCTCG
27._GC-08-275-8-47
CCCCAGAGCCCCGGAGTTTT_CCCCCG
28._GC-08-275-8-47
CCCCAGAGCCCCGGAGTTTT_CCCCCG
29._GC-08-275-8-47
_CCAGAGCCCCGGAGTTTT_CCCCCG
 43             
_Input profile
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1642
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_1642
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._PA_195_[PER]
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._PA_195_[PER]
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._PA_195_[PER]
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._PA_195_[PER]
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._RUQ_1642
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._RUQ_1642
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._PA_195_[PER]
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-05-166-4-19
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-05-166-4-19
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-05-166-4-19
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-05-166-4-19
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._PA_115_[PER]
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._PA_165_[PER]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-03-032-3-11
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._PA_187_[PER]
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-07-077-4-21
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._PA_189_[PER]
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-03-032-3-11
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-01-034-2-11
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-01-034-2-11
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-01-034-2-11
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-01-034-2-11
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._RUQ_1436
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._RUQ_32
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-08-275-8-47
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-08-275-8-47
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-08-275-8-47
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_124_[PER] RUQ_1576

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_195_[PER] RUQ_1642

identical
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_195_[PER] RUQ_1642

identical
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_195_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5419 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

4._PA_195_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5419 1 > FP
 Dapeng Zhang, 2016

5._PA_195_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5419 2 > FP
 Dapeng Zhang, 2016

6._PA_195_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5419 5 > FP
 Dapeng Zhang, 2016

7._PA_195_[PER] RUQ_1642

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._PA_195_[PER] RUQ_1642

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_195_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B C165 T1
 Dapeng Zhang, 2016

10._PA_195_[PER] GC-05-166-4-19

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._PA_195_[PER] GC-05-166-4-19

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

12._PA_195_[PER] GC-05-166-4-19

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._PA_195_[PER] GC-05-166-4-19

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

14._PA_115_[PER]

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 324
 Dapeng Zhang, 2014

15._PA_165_[PER]

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 714
 Dapeng Zhang, 2014

16._EET_272_[ECU] GC-03-032-3-11

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._PA_187_[PER]

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 737
 Dapeng Zhang, 2014

18._EQX_/O_[CHA] GC-07-077-4-21

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._PA_189_[PER]

91.3 %
23 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 489
 Dapeng Zhang, 2014

20._EET_272_[ECU] GC-03-032-3-11

90.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

21._PA_150_[PER] GC-01-034-2-11

90.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._PA_150_[PER] GC-01-034-2-11

90.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

23._PA_150_[PER] GC-01-034-2-11

90.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

24._PA_150_[PER] GC-01-034-2-11

90.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._MOQ_6_/95 RUQ_1436

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

26._PA_56_[PER] RUQ_32

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._IMC_41 GC-08-275-8-47

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._IMC_41 GC-08-275-8-47

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._IMC_41 GC-08-275-8-47

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP999 34TcSNP1060 35TcSNP1063
36TcSNP1111 37TcSNP1126 38TcSNP1253 39TcSNP1309 40TcSNP1439
41TcSNP1442 42TcSNP1458 43TcSNP1484